Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-glu | Not Available | Not Available | Positive | 189431 - 189503 | Not Available |
| Trna-ser | Not Available | Not Available | Positive | 189523 - 189609 | Not Available |
| phoh family protein | DW921_00990 | Not Available | Positive | 189851 - 190804 | 35592.0 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | DW921_00995 | Not Available | Positive | 190812 - 191759 | 36031.1 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | DW921_01000 | Not Available | Positive | 191835 - 192572 | 27876.7 |
| shikimate dehydrogenase | DW921_01005 | Not Available | Positive | 192584 - 193333 | 27924.8 |
| alpha/beta hydrolase | DW921_01010 | Not Available | Positive | 193330 - 194280 | 36263.6 |
| phosphate abc transporter substrate-binding protein | DW921_01015 | Not Available | Positive | 194419 - 195258 | 30977.6 |
| phosphate abc transporter permease subunit pstc | DW921_01020 | Not Available | Positive | 195270 - 196466 | 43019.3 |
| phosphate abc transporter permease psta | DW921_01025 | Not Available | Positive | 196471 - 197355 | 32161.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


