Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| moba protein | DW921_10620 | Not Available | Positive | 2486756 - 2487262 | 19712.0 |
| mobilization protein | DW921_10625 | Not Available | Positive | 2487247 - 2488509 | 48383.2 |
| conjugal transfer protein trag | DW921_10630 | Not Available | Positive | 2488572 - 2490608 | 77259.3 |
| hypothetical protein | DW921_10635 | Not Available | Positive | 2490896 - 2491309 | 16181.6 |
| sigma-54-dependent fis family transcriptional regulator | DW921_10640 | Not Available | Negative | 2491313 - 2492596 | 48015.4 |
| response regulator | DW921_10645 | Not Available | Negative | 2492577 - 2494895 | 88661.1 |
| abc transporter atp-binding protein | DW921_10650 | Not Available | Negative | 2495235 - 2495900 | 24765.2 |
| abc transporter permease | DW921_10655 | Not Available | Negative | 2495917 - 2498322 | 92442.3 |
| efflux rnd transporter periplasmic adaptor subunit | DW921_10660 | Not Available | Negative | 2498322 - 2499569 | 47806.6 |
| tolc family protein | DW921_10665 | Not Available | Negative | 2499618 - 2500970 | 53019.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


