Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_10560 | Not Available | Positive | 2475923 - 2476669 | 27525.1 |
| hypothetical protein | DW921_10565 | Not Available | Positive | 2476654 - 2478075 | 53888.6 |
| tatd family deoxyribonuclease | DW921_10570 | Not Available | Positive | 2478069 - 2478758 | 26411.0 |
| atp-dependent recd-like dna helicase | DW921_10575 | Not Available | Positive | 2478783 - 2481044 | 84659.5 |
| is21 family transposase | DW921_10585 | Not Available | Positive | 2482078 - 2483685 | 62071.3 |
| hypothetical protein | DW921_10590 | Not Available | Positive | 2483686 - 2484414 | 27570.4 |
| duf4122 domain-containing protein | DW921_10595 | Not Available | Negative | 2484503 - 2484690 | 7295.16 |
| duf3408 domain-containing protein | DW921_10600 | Not Available | Negative | 2484678 - 2485052 | 14274.8 |
| duf3408 domain-containing protein | DW921_10605 | Not Available | Negative | 2485055 - 2485492 | 16747.2 |
| para family protein | DW921_10610 | Not Available | Negative | 2485498 - 2486250 | 28636.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


