Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_10510 | Not Available | Negative | 2458274 - 2458654 | 14719.2 |
| xre family transcriptional regulator | DW921_10515 | Not Available | Positive | 2459861 - 2460067 | 7651.42 |
| brxe family protein | DW921_10520 | Not Available | Positive | 2460075 - 2460545 | 18151.8 |
| duf1819 family protein | DW921_10525 | Not Available | Positive | 2460545 - 2461309 | 29916.2 |
| duf1788 domain-containing protein | DW921_10530 | Not Available | Positive | 2461296 - 2461856 | 21846.3 |
| brex system p-loop protein brxc | DW921_10535 | Not Available | Positive | 2461860 - 2465507 | 136795.0 |
| brex-1 system adenine-specific dna-methyltransferase pglx | DW921_10540 | Not Available | Positive | 2465522 - 2469442 | 150922.0 |
| pglz domain-containing protein | DW921_10545 | Not Available | Positive | 2469457 - 2471937 | 93862.1 |
| brex system lon protease-like protein brxl | DW921_10550 | Not Available | Positive | 2471941 - 2474091 | 82384.5 |
| kap p-loop protein | DW921_10555 | Not Available | Positive | 2474094 - 2475911 | 70399.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


