Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_10460 | Not Available | Positive | 2449632 - 2449985 | 14039.0 |
| dna-binding protein | DW921_10465 | Not Available | Positive | 2450177 - 2450380 | 7738.54 |
| toprim domain-containing protein | DW921_10470 | Not Available | Positive | 2450377 - 2453661 | 125853.0 |
| abi family protein | DW921_10475 | Not Available | Positive | 2453842 - 2454735 | 34804.2 |
| duf1273 family protein | DW921_10480 | Not Available | Negative | 2454935 - 2455435 | 18778.8 |
| ribonucleotide-diphosphate reductase subunit alpha | DW921_10485 | Not Available | Negative | 2455438 - 2456007 | 21585.8 |
| dna-binding protein | DW921_10490 | Not Available | Positive | 2456911 - 2457165 | 9826.04 |
| hypothetical protein | DW921_10495 | Not Available | Negative | 2457199 - 2457576 | 13848.4 |
| hypothetical protein | DW921_10500 | Not Available | Negative | 2457668 - 2458030 | 13700.6 |
| sulfide:quinone reductase | DW921_10505 | Not Available | Negative | 2458038 - 2458352 | 12209.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


