Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminoacyl-trna hydrolase | DW921_10405 | Not Available | Positive | 2436964 - 2437527 | 20728.2 |
| rna-binding s4 domain-containing protein | DW921_10410 | Not Available | Positive | 2437540 - 2437971 | 16449.7 |
| sodium:proton antiporter | DW921_10415 | Not Available | Negative | 2438079 - 2440358 | 83715.9 |
| glycine cleavage system aminomethyltransferase gcvt | DW921_10420 | Not Available | Negative | 2440574 - 2441659 | 39760.5 |
| peptidase t | DW921_10425 | Not Available | Negative | 2441814 - 2443040 | 45275.1 |
| hypothetical protein | DW921_10430 | Not Available | Positive | 2443222 - 2444469 | 47607.2 |
| atp-binding protein | DW921_10440 | Not Available | Positive | 2446520 - 2447800 | 49257.2 |
| rlob domain-containing protein | DW921_10445 | Not Available | Positive | 2447793 - 2448692 | 35948.3 |
| xre family transcriptional regulator | DW921_10450 | Not Available | Negative | 2448781 - 2449278 | 18732.5 |
| hypothetical protein | DW921_10455 | Not Available | Positive | 2449421 - 2449612 | 7266.84 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


