Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_10355 | Not Available | Positive | 2427785 - 2427967 | 6853.14 |
| atp-dependent chaperone clpb | DW921_10360 | Not Available | Positive | 2428119 - 2430707 | 97521.8 |
| ompa family protein | DW921_10365 | Not Available | Positive | 2430857 - 2431984 | 40998.7 |
| hypothetical protein | DW921_10370 | Not Available | Negative | 2432064 - 2432474 | 15088.2 |
| dephospho-coa kinase | DW921_10375 | Not Available | Negative | 2432541 - 2433143 | 22638.5 |
| ybbr-like domain-containing protein | DW921_10380 | Not Available | Negative | 2433136 - 2434155 | 39150.3 |
| preprotein translocase subunit yajc | DW921_10385 | Not Available | Negative | 2434168 - 2434476 | 11319.0 |
| transcription antitermination factor nusb | DW921_10390 | Not Available | Negative | 2434521 - 2435447 | 36206.3 |
| duf3276 family protein | DW921_10395 | Not Available | Positive | 2435625 - 2436014 | 15047.8 |
| 50s ribosomal protein l25/general stress protein ctc | DW921_10400 | Not Available | Positive | 2436330 - 2436926 | 21415.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


