Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 25 protein | DW921_10305 | Not Available | Negative | 2416927 - 2417820 | 34885.9 |
| diphosphate--fructose-6-phosphate 1-phosphotransferase | DW921_10310 | Not Available | Negative | 2417949 - 2419592 | 59983.1 |
| hypothetical protein | DW921_10315 | Not Available | Positive | 2419784 - 2420065 | 10666.0 |
| acyltransferase | DW921_10320 | Not Available | Positive | 2420062 - 2420616 | 21335.3 |
| xanthan lyase | DW921_10325 | Not Available | Positive | 2420741 - 2423614 | 107129.0 |
| hypothetical protein | DW921_10330 | Not Available | Positive | 2423687 - 2424007 | 12370.7 |
| ygiq family radical sam protein | DW921_10335 | Not Available | Positive | 2424041 - 2425852 | 69692.2 |
| lysr family transcriptional regulator | DW921_10340 | Not Available | Negative | 2425857 - 2426756 | 34230.6 |
| hypothetical protein | DW921_10345 | Not Available | Negative | 2426772 - 2427353 | 21455.0 |
| hypothetical protein | DW921_10350 | Not Available | Negative | 2427366 - 2427776 | 15086.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


