Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-oxoglutarate oxidoreductase | DW921_10255 | Not Available | Positive | 2405597 - 2406370 | 28320.4 |
| 2-oxoglutarate ferredoxin oxidoreductase subunit gamma | DW921_10260 | Not Available | Positive | 2406388 - 2406930 | 19929.7 |
| hypothetical protein | DW921_10265 | Not Available | Positive | 2407106 - 2409232 | 81580.7 |
| glutamine abc transporter substrate-binding protein | DW921_10270 | Not Available | Positive | 2409238 - 2410056 | 31109.5 |
| gfo/idh/moca family oxidoreductase | DW921_10275 | Not Available | Positive | 2410077 - 2411063 | 36662.0 |
| duf4421 domain-containing protein | DW921_10280 | Not Available | Positive | 2411080 - 2412237 | 44400.8 |
| hypothetical protein | DW921_10285 | Not Available | Negative | 2412306 - 2413898 | 58705.3 |
| hypothetical protein | DW921_10290 | Not Available | Negative | 2413971 - 2415233 | 47659.3 |
| 50s ribosomal protein l11 methyltransferase | DW921_10295 | Not Available | Positive | 2415585 - 2416430 | 31676.6 |
| yccf domain-containing protein | DW921_10300 | Not Available | Negative | 2416556 - 2416930 | 13168.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


