Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anthranilate phosphoribosyltransferase | DW921_10205 | Not Available | Positive | 2396489 - 2397484 | 36456.9 |
| indole-3-glycerol phosphate synthase trpc | DW921_10210 | Not Available | Positive | 2397497 - 2398285 | 29072.0 |
| phosphoribosylanthranilate isomerase | DW921_10215 | Not Available | Positive | 2398282 - 2398899 | 23410.9 |
| tryptophan synthase subunit alpha | DW921_10220 | Not Available | Positive | 2398896 - 2399672 | 28837.9 |
| type i asparaginase | DW921_10225 | Not Available | Positive | 2399786 - 2400835 | 38994.1 |
| dna-binding response regulator | DW921_10230 | Not Available | Positive | 2400936 - 2401622 | 26328.0 |
| two-component sensor histidine kinase | DW921_10235 | Not Available | Positive | 2401636 - 2403414 | 68393.4 |
| tetratricopeptide repeat protein | DW921_10240 | Not Available | Positive | 2403751 - 2404026 | 10329.2 |
| 4fe-4s dicluster domain-containing protein | DW921_10245 | Not Available | Positive | 2404047 - 2404277 | 8152.06 |
| 3-methyl-2-oxobutanoate dehydrogenase subunit vorb | DW921_10250 | Not Available | Positive | 2404313 - 2405392 | 39072.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


