Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf5020 family protein | DW921_10150 | Not Available | Positive | 2384024 - 2384725 | 27408.1 |
| hypothetical protein | DW921_10160 | Not Available | Negative | 2386471 - 2386665 | 7090.81 |
| mip family channel protein | DW921_10165 | Not Available | Negative | 2387508 - 2388185 | 23084.2 |
| lema family protein | DW921_10170 | Not Available | Positive | 2388531 - 2389112 | 21561.7 |
| tpm domain-containing protein | DW921_10175 | Not Available | Positive | 2389121 - 2390050 | 33470.3 |
| chorismate synthase | DW921_10180 | Not Available | Positive | 2390106 - 2391185 | 39164.7 |
| dipeptidase | DW921_10185 | Not Available | Positive | 2391202 - 2392566 | 50643.6 |
| tryptophan synthase subunit beta | DW921_10190 | Not Available | Positive | 2393257 - 2394453 | 44035.8 |
| anthranilate synthase component i family protein | DW921_10195 | Not Available | Positive | 2394468 - 2395868 | 52633.2 |
| aminodeoxychorismate/anthranilate synthase component ii | DW921_10200 | Not Available | Positive | 2395878 - 2396441 | 20877.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


