Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb family protein | DW921_09990 | Not Available | Negative | 2336443 - 2338770 | 87291.6 |
| abc transporter permease | DW921_09995 | Not Available | Negative | 2338786 - 2339943 | 43257.8 |
| biotin/lipoyl-binding protein | DW921_10000 | Not Available | Negative | 2339954 - 2340946 | 36015.2 |
| tolc family protein | DW921_10005 | Not Available | Negative | 2340956 - 2342419 | 53656.0 |
| peptidase s41 | DW921_10010 | Not Available | Negative | 2342532 - 2343893 | 50062.6 |
| hypothetical protein | DW921_10015 | Not Available | Negative | 2343902 - 2344774 | 33148.9 |
| hypothetical protein | DW921_10020 | Not Available | Negative | 2345237 - 2346964 | 63328.4 |
| nadp-specific glutamate dehydrogenase | DW921_10025 | Not Available | Negative | 2347117 - 2348454 | 48534.5 |
| phosphoenolpyruvate synthase | DW921_10030 | Not Available | Positive | 2348648 - 2351605 | 113102.0 |
| duf4925 domain-containing protein | DW921_10035 | Not Available | Positive | 2351931 - 2353145 | 43153.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


