Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetylornithine carbamoyltransferase | DW921_09890 | Not Available | Negative | 2313938 - 2314900 | 36359.6 |
| duf2007 domain-containing protein | DW921_09895 | Not Available | Positive | 2315081 - 2315311 | 8151.85 |
| hypothetical protein | DW921_09900 | Not Available | Positive | 2315308 - 2315778 | 17460.3 |
| lytic transglycosylase domain-containing protein | DW921_09905 | Not Available | Positive | 2315792 - 2316760 | 37496.1 |
| duf4981 domain-containing protein | DW921_09910 | Not Available | Positive | 2316792 - 2319902 | 118128.0 |
| hypothetical protein | DW921_09915 | Not Available | Positive | 2320119 - 2320562 | 16664.3 |
| radical sam protein | DW921_09920 | Not Available | Positive | 2320559 - 2321656 | 42200.3 |
| hypothetical protein | DW921_09925 | Not Available | Negative | 2321727 - 2322386 | 25455.8 |
| hypothetical protein | DW921_09930 | Not Available | Negative | 2323664 - 2324416 | 27820.7 |
| had family hydrolase | DW921_09935 | Not Available | Negative | 2324519 - 2325181 | 24555.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


