Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DW921_09790 | Not Available | Positive | 2295363 - 2296655 | 47609.2 |
| dna repair protein reco | DW921_09795 | Not Available | Negative | 2296661 - 2297386 | 27914.9 |
| Trna-glu | Not Available | Not Available | Positive | 2297560 - 2297631 | Not Available |
| 30s ribosomal protein s20 | DW921_09805 | Not Available | Positive | 2297674 - 2297928 | 9716.13 |
| dna topoisomerase (atp-hydrolyzing) subunit b | DW921_09810 | Not Available | Positive | 2298127 - 2300097 | 73056.7 |
| hypothetical protein | DW921_09815 | Not Available | Positive | 2300887 - 2302545 | 60296.5 |
| hypothetical protein | DW921_09820 | Not Available | Positive | 2302629 - 2303354 | 26193.0 |
| udp-2,3-diacylglucosamine diphosphatase | DW921_09825 | Not Available | Negative | 2303482 - 2304249 | 30183.1 |
| duf59 domain-containing protein | DW921_09830 | Not Available | Negative | 2304306 - 2304626 | 12110.6 |
| dna repair protein radc | DW921_09835 | Not Available | Negative | 2304689 - 2305381 | 25507.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


