Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_09690 | Not Available | Positive | 2271265 - 2271516 | 9656.08 |
| hypothetical protein | DW921_09695 | Not Available | Positive | 2271533 - 2272966 | 54675.6 |
| hypothetical protein | DW921_09700 | Not Available | Positive | 2273075 - 2274577 | 58531.7 |
| hypothetical protein | DW921_09705 | Not Available | Positive | 2274660 - 2275592 | 36658.1 |
| gnat family n-acetyltransferase | DW921_09710 | Not Available | Negative | 2276539 - 2277522 | 37429.9 |
| glycerol acyltransferase | DW921_09715 | Not Available | Negative | 2277546 - 2278364 | 31069.0 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | DW921_09720 | Not Available | Positive | 2278658 - 2279572 | 34970.7 |
| hypothetical protein | DW921_09725 | Not Available | Positive | 2279585 - 2279932 | 13391.2 |
| pasta domain-containing protein | DW921_09730 | Not Available | Positive | 2279935 - 2282064 | 78906.7 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | DW921_09735 | Not Available | Positive | 2282072 - 2283538 | 53377.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


