Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-phe | Not Available | Not Available | Positive | 2264262 - 2264334 | Not Available |
| site-specific integrase | DW921_09645 | Not Available | Positive | 2264579 - 2265811 | 47274.9 |
| hypothetical protein | DW921_09650 | Not Available | Positive | 2265815 - 2266189 | 14429.0 |
| dna-binding protein | DW921_09655 | Not Available | Negative | 2266346 - 2266648 | 11764.1 |
| dna-binding protein | DW921_09660 | Not Available | Negative | 2266682 - 2266993 | 12638.2 |
| hypothetical protein | DW921_09665 | Not Available | Negative | 2267434 - 2267805 | 13543.8 |
| plasmid mobilization relaxosome protein mobc | DW921_09670 | Not Available | Positive | 2267851 - 2268216 | 13829.7 |
| mobilization protein | DW921_09675 | Not Available | Positive | 2268213 - 2269133 | 35232.2 |
| hypothetical protein | DW921_09680 | Not Available | Positive | 2269137 - 2269616 | 18512.2 |
| site-specific integrase | DW921_09685 | Not Available | Positive | 2269618 - 2270820 | 46158.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


