Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| long-chain fatty acid--coa ligase | DW921_09540 | Not Available | Positive | 2237520 - 2239172 | 62409.8 |
| hypothetical protein | DW921_09545 | Not Available | Positive | 2239183 - 2240433 | 44048.2 |
| hypothetical protein | DW921_09550 | Not Available | Positive | 2240738 - 2240947 | 8076.58 |
| crp/fnr family transcriptional regulator | DW921_09555 | Not Available | Negative | 2240972 - 2241559 | 22632.8 |
| yitt family protein | DW921_09560 | Not Available | Negative | 2241611 - 2242501 | 32667.4 |
| ll-diaminopimelate aminotransferase | DW921_09565 | Not Available | Positive | 2242735 - 2243964 | 45845.0 |
| glutamine synthetase type iii | DW921_09570 | Not Available | Positive | 2244004 - 2246193 | 82359.9 |
| putative transporter | DW921_09575 | Not Available | Positive | 2246386 - 2248047 | 59508.9 |
| fructose-1,6-bisphosphatase | DW921_09580 | Not Available | Positive | 2248060 - 2250057 | 76755.6 |
| aspartate 1-decarboxylase | DW921_09585 | Not Available | Negative | 2250135 - 2250485 | 12759.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


