Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diaminopimelate decarboxylase | DW921_09490 | Not Available | Positive | 2225506 - 2226666 | 42754.3 |
| glycosyltransferase | DW921_09495 | Not Available | Positive | 2226820 - 2227986 | 44474.8 |
| hypothetical protein | DW921_09500 | Not Available | Negative | 2228084 - 2230249 | 83584.4 |
| crp/fnr family transcriptional regulator | DW921_09505 | Not Available | Positive | 2230394 - 2231095 | 26578.4 |
| abc transporter permease | DW921_09510 | Not Available | Negative | 2231188 - 2232435 | 46050.6 |
| pyridoxal phosphate-dependent aminotransferase | DW921_09515 | Not Available | Negative | 2232435 - 2233637 | 45111.2 |
| fucose isomerase | DW921_09520 | Not Available | Positive | 2233843 - 2235078 | 46237.9 |
| duf4494 domain-containing protein | DW921_09525 | Not Available | Positive | 2235171 - 2235653 | 18237.7 |
| yggs family pyridoxal phosphate-dependent enzyme | DW921_09530 | Not Available | Positive | 2235660 - 2236328 | 25490.6 |
| dihydroorotate dehydrogenase-like protein | DW921_09535 | Not Available | Positive | 2236343 - 2237317 | 35560.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


