Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DW921_09435 | Not Available | Negative | 2216786 - 2217982 | 45952.9 |
| dna-binding protein | DW921_09440 | Not Available | Positive | 2218243 - 2218521 | 10911.3 |
| site-specific integrase | DW921_09445 | Not Available | Negative | 2218619 - 2219854 | 48132.9 |
| Trna-asp | Not Available | Not Available | Positive | 2220132 - 2220208 | Not Available |
| imidazole glycerol phosphate synthase subunit hish | DW921_09460 | Not Available | Positive | 2220461 - 2221051 | 22095.6 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | DW921_09465 | Not Available | Positive | 2221102 - 2221821 | 26307.7 |
| imidazole glycerol phosphate synthase subunit hisf | DW921_09470 | Not Available | Positive | 2221844 - 2222599 | 27161.4 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | DW921_09475 | Not Available | Positive | 2222629 - 2223243 | 23450.8 |
| atp-binding cassette domain-containing protein | DW921_09480 | Not Available | Positive | 2223248 - 2223928 | 25864.3 |
| aspartate kinase | DW921_09485 | Not Available | Positive | 2224053 - 2225372 | 49197.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


