Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plasmid mobilization relaxosome protein mobc | DW921_09385 | Not Available | Negative | 2210403 - 2210792 | 14460.7 |
| duf3408 domain-containing protein | DW921_09390 | Not Available | Negative | 2211001 - 2211486 | 18733.1 |
| dna-binding protein | DW921_09395 | Not Available | Positive | 2211902 - 2212213 | 12375.9 |
| dna-binding protein | DW921_09400 | Not Available | Positive | 2212267 - 2212572 | 12011.3 |
| hypothetical protein | DW921_09405 | Not Available | Positive | 2212623 - 2212907 | 10495.9 |
| hypothetical protein | DW921_09410 | Not Available | Negative | 2212919 - 2213293 | 14340.5 |
| site-specific integrase | DW921_09415 | Not Available | Negative | 2213315 - 2214538 | 47108.7 |
| site-specific integrase | DW921_09420 | Not Available | Negative | 2214576 - 2215808 | 47774.9 |
| recombinase | DW921_09425 | Not Available | Positive | 2215860 - 2216312 | 17110.7 |
| dna-binding protein | DW921_09430 | Not Available | Positive | 2216397 - 2216687 | 11212.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


