Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_09325 | Not Available | Negative | 2195472 - 2196728 | 49425.3 |
| hypothetical protein | DW921_09335 | Not Available | Positive | 2198308 - 2198490 | 7074.38 |
| hypothetical protein | DW921_09340 | Not Available | Negative | 2198430 - 2198831 | 15229.5 |
| atp-binding protein | DW921_09350 | Not Available | Positive | 2200244 - 2201590 | 51388.8 |
| hypothetical protein | DW921_09355 | Not Available | Positive | 2201825 - 2202034 | 7897.19 |
| dead/deah box helicase | DW921_09360 | Not Available | Negative | 2202321 - 2206322 | 152196.0 |
| restriction endonuclease subunit m | DW921_09365 | Not Available | Negative | 2206329 - 2207345 | 39693.2 |
| site-specific integrase | DW921_09370 | Not Available | Negative | 2207626 - 2208834 | 46981.7 |
| hypothetical protein | DW921_09375 | Not Available | Negative | 2208836 - 2209480 | 24121.7 |
| mobilization protein | DW921_09380 | Not Available | Negative | 2209483 - 2210406 | 35770.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


