Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-succinylbenzoic acid--coa ligase | DW921_09270 | Not Available | Negative | 2177326 - 2178471 | 42446.9 |
| o-succinylbenzoate synthase | DW921_09275 | Not Available | Negative | 2178464 - 2179315 | 31712.9 |
| 1,4-dihydroxy-2-naphthoyl-coa synthase | DW921_09280 | Not Available | Negative | 2179689 - 2180513 | 30329.7 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | DW921_09285 | Not Available | Negative | 2180527 - 2182194 | 62021.6 |
| isochorismate synthase | DW921_09290 | Not Available | Negative | 2182198 - 2183280 | 40274.2 |
| paai family thioesterase | DW921_09295 | Not Available | Negative | 2183277 - 2183645 | 12850.8 |
| glycoside hydrolase family 29 | DW921_09300 | Not Available | Negative | 2183882 - 2185771 | 71183.9 |
| ragb/susd family nutrient uptake outer membrane protein | DW921_09305 | Not Available | Negative | 2185890 - 2187578 | 64474.0 |
| tonb-dependent receptor | DW921_09310 | Not Available | Negative | 2187601 - 2190774 | 117985.0 |
| duf262 domain-containing protein | DW921_09320 | Not Available | Negative | 2193152 - 2195482 | 91382.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


