Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 16 protein | DW921_09215 | Not Available | Negative | 2154726 - 2155508 | 29574.1 |
| bifunctional dihydroorotate dehydrogenase b nad binding subunit/nadph-dependent glutamate synthase | DW921_09220 | Not Available | Positive | 2155764 - 2158058 | 82850.7 |
| mfs transporter | DW921_09225 | Not Available | Positive | 2158254 - 2159639 | 50389.6 |
| duf5107 domain-containing protein | DW921_09230 | Not Available | Positive | 2159708 - 2162995 | 126623.0 |
| arac family transcriptional regulator | DW921_09235 | Not Available | Negative | 2163107 - 2163994 | 34507.4 |
| hypothetical protein | DW921_09240 | Not Available | Positive | 2164293 - 2166533 | 84157.3 |
| beta-galactosidase | DW921_09245 | Not Available | Positive | 2166893 - 2169661 | 104259.0 |
| beta-galactosidase | DW921_09250 | Not Available | Positive | 2169663 - 2172437 | 104000.0 |
| endonuclease/exonuclease/phosphatase family protein | DW921_09255 | Not Available | Positive | 2172646 - 2173677 | 39679.0 |
| sodium:proton antiporter | DW921_09265 | Not Available | Negative | 2175156 - 2177288 | 80389.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


