Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate ammonia-lyase | DW921_09165 | Not Available | Positive | 2145743 - 2147167 | 51907.8 |
| cation transporter | DW921_09170 | Not Available | Negative | 2147223 - 2148110 | 32615.8 |
| transcriptional repressor | DW921_09175 | Not Available | Negative | 2148113 - 2148541 | 16328.5 |
| hypothetical protein | DW921_09180 | Not Available | Negative | 2148554 - 2148739 | 7208.89 |
| ribonuclease e/g | DW921_09185 | Not Available | Negative | 2148842 - 2150416 | 59780.8 |
| integration host factor subunit beta | DW921_09190 | Not Available | Negative | 2150710 - 2150985 | 10100.3 |
| a/g-specific adenine glycosylase | DW921_09195 | Not Available | Positive | 2151150 - 2152217 | 41093.4 |
| single-stranded dna-binding protein | DW921_09200 | Not Available | Positive | 2152230 - 2152685 | 16530.4 |
| gliding motility-associated protein glde | DW921_09205 | Not Available | Positive | 2152714 - 2154078 | 51695.3 |
| hypothetical protein | DW921_09210 | Not Available | Positive | 2154090 - 2154737 | 24794.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


