Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar kinase | DW921_09055 | Not Available | Positive | 2117395 - 2118435 | 37707.3 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | DW921_09060 | Not Available | Positive | 2118513 - 2119184 | 23891.1 |
| hypothetical protein | DW921_09065 | Not Available | Negative | 2119162 - 2119374 | 6742.13 |
| arylsulfatase | DW921_09070 | Not Available | Negative | 2119518 - 2121026 | 56241.7 |
| arylsulfatase | DW921_09075 | Not Available | Negative | 2121013 - 2122593 | 58203.7 |
| efflux rnd transporter periplasmic adaptor subunit | DW921_09090 | Not Available | Negative | 2127361 - 2128455 | 40822.4 |
| molecular chaperone dnak | DW921_09095 | Not Available | Positive | 2128761 - 2130656 | 67504.1 |
| hypothetical protein | DW921_09100 | Not Available | Positive | 2130969 - 2131169 | 7972.75 |
| amidophosphoribosyltransferase | DW921_09105 | Not Available | Positive | 2131195 - 2133078 | 71389.6 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit | DW921_09110 | Not Available | Positive | 2133131 - 2134207 | 40070.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


