Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chloramphenicol resistance protein | DW921_09005 | Not Available | Negative | 2099527 - 2101674 | 81141.5 |
| glycoside hydrolase family 88 protein | DW921_09010 | Not Available | Negative | 2101724 - 2104669 | 112126.0 |
| alpha-n-acetylglucosaminidase | DW921_09015 | Not Available | Negative | 2105092 - 2107362 | 86234.9 |
| alpha-l-fucosidase | DW921_09020 | Not Available | Positive | 2107581 - 2109959 | 90058.4 |
| glucuronyl hydrolase | DW921_09025 | Not Available | Positive | 2110128 - 2111369 | 46381.5 |
| duf2264 domain-containing protein | DW921_09030 | Not Available | Positive | 2111455 - 2112651 | 45487.2 |
| gluconate 5-dehydrogenase | DW921_09035 | Not Available | Positive | 2112688 - 2113482 | 28178.1 |
| duf4861 domain-containing protein | DW921_09040 | Not Available | Positive | 2113494 - 2114771 | 46363.7 |
| pts sugar transporter subunit iic | DW921_09045 | Not Available | Positive | 2114847 - 2116250 | 50852.5 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DW921_09050 | Not Available | Positive | 2116308 - 2117228 | 34672.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


