Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class ii aldolase/adducin family protein | DW921_08900 | Not Available | Positive | 2062812 - 2063450 | 23425.1 |
| rhamnulokinase | DW921_08905 | Not Available | Positive | 2063548 - 2064936 | 50686.8 |
| l-fucose:h+ symporter permease | DW921_08910 | Not Available | Positive | 2064954 - 2066270 | 48877.0 |
| hypothetical protein | DW921_08915 | Not Available | Positive | 2066427 - 2067089 | 24172.8 |
| o-glcnacase | DW921_08920 | Not Available | Negative | 2067145 - 2069364 | 83657.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW921_08930 | Not Available | Positive | 2073054 - 2075042 | 74269.3 |
| glycoside hydrolase family 29 | DW921_08935 | Not Available | Positive | 2075211 - 2076626 | 53355.2 |
| duf4976 domain-containing protein | DW921_08940 | Not Available | Positive | 2076639 - 2078183 | 57414.6 |
| bifunctional folylpolyglutamate synthase/dihydrofolate synthase | DW921_08945 | Not Available | Positive | 2078259 - 2079545 | 47654.6 |
| galactose mutarotase | DW921_08950 | Not Available | Positive | 2079640 - 2080734 | 40172.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


