Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | DW921_08695 | Not Available | Negative | 2020985 - 2021464 | 17917.3 |
| dna-binding protein | DW921_08700 | Not Available | Negative | 2021566 - 2022009 | 15792.9 |
| transposase | DW921_08710 | Not Available | Negative | 2022980 - 2024227 | 47287.4 |
| is200/is605 family transposase | DW921_08715 | Not Available | Positive | 2024258 - 2024665 | 16260.8 |
| xre family transcriptional regulator | DW921_08720 | Not Available | Negative | 2024692 - 2025021 | 12090.8 |
| sugar kinase | DW921_08725 | Not Available | Positive | 2025211 - 2026251 | 38419.8 |
| xre family transcriptional regulator | DW921_08730 | Not Available | Negative | 2026318 - 2026611 | 11383.1 |
| hypothetical protein | DW921_08735 | Not Available | Negative | 2026598 - 2027086 | 18666.1 |
| duf3987 domain-containing protein | DW921_08740 | Not Available | Positive | 2027477 - 2029861 | 90725.5 |
| hypothetical protein | DW921_08745 | Not Available | Negative | 2030001 - 2030276 | 10960.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


