Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase rpb6 | DW921_08645 | Not Available | Negative | 2010297 - 2010632 | 13052.4 |
| outer membrane protein assembly factor bamd | DW921_08650 | Not Available | Negative | 2010667 - 2011521 | 33062.1 |
| excinuclease abc subunit uvrb | DW921_08655 | Not Available | Positive | 2011692 - 2013725 | 77706.6 |
| alpha-galactosidase | DW921_08660 | Not Available | Negative | 2013753 - 2015336 | 59734.0 |
| hypothetical protein | DW921_08665 | Not Available | Negative | 2015531 - 2015902 | 13779.5 |
| phenylacetate--coa ligase | DW921_08670 | Not Available | Positive | 2016287 - 2017600 | 49972.6 |
| amino acid-binding protein | DW921_08675 | Not Available | Positive | 2017628 - 2018053 | 15582.7 |
| gtra family protein | DW921_08680 | Not Available | Negative | 2018248 - 2018637 | 15275.0 |
| aspartate--trna ligase | DW921_08685 | Not Available | Negative | 2018780 - 2020537 | 66426.8 |
| duf4248 domain-containing protein | DW921_08690 | Not Available | Negative | 2020629 - 2020883 | 10072.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


