Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | DW921_08595 | Not Available | Positive | 2001308 - 2002861 | 59974.6 |
| duf3784 domain-containing protein | DW921_08600 | Not Available | Positive | 2002874 - 2003176 | 11174.5 |
| formate--tetrahydrofolate ligase | DW921_08605 | Not Available | Negative | 2003316 - 2004983 | 60295.0 |
| cof-type had-iib family hydrolase | DW921_08610 | Not Available | Negative | 2005073 - 2005867 | 29189.1 |
| helix-turn-helix domain-containing protein | DW921_08615 | Not Available | Negative | 2005892 - 2006431 | 21200.8 |
| duf340 domain-containing protein | DW921_08620 | Not Available | Positive | 2006880 - 2007158 | 10034.6 |
| lysine exporter lyso family protein | DW921_08625 | Not Available | Positive | 2007155 - 2007781 | 22514.7 |
| pyridoxamine 5'-phosphate oxidase family protein | DW921_08630 | Not Available | Positive | 2007859 - 2008377 | 19423.2 |
| mate family efflux transporter | DW921_08635 | Not Available | Positive | 2008358 - 2009698 | 49597.6 |
| duf4293 family protein | DW921_08640 | Not Available | Negative | 2009838 - 2010287 | 16769.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


