Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_08545 | Not Available | Negative | 1988512 - 1989108 | 22736.2 |
| mfs transporter | DW921_08550 | Not Available | Negative | 1989105 - 1990364 | 45776.7 |
| hypothetical protein | DW921_08555 | Not Available | Negative | 1990512 - 1991240 | 26025.0 |
| lipoyl(octanoyl) transferase lipb | DW921_08560 | Not Available | Negative | 1991313 - 1991972 | 24836.7 |
| duf3298 domain-containing protein | DW921_08565 | Not Available | Positive | 1992132 - 1992992 | 32000.1 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | DW921_08570 | Not Available | Positive | 1993014 - 1993643 | 23663.8 |
| mbl fold metallo-hydrolase | DW921_08575 | Not Available | Positive | 1993668 - 1994306 | 23858.3 |
| glycine dehydrogenase (aminomethyl-transferring) | DW921_08580 | Not Available | Positive | 1994339 - 1997188 | 104313.0 |
| beta-glucosidase | DW921_08585 | Not Available | Negative | 1997329 - 1999674 | 86698.5 |
| hypothetical protein | DW921_08590 | Not Available | Negative | 1999709 - 2001076 | 50400.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


