Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| f0f1 atp synthase subunit delta | DW921_08495 | Not Available | Negative | 1980883 - 1981437 | 21082.6 |
| atp synthase f0 subunit b | DW921_08500 | Not Available | Negative | 1981446 - 1981949 | 19239.6 |
| atp synthase f0 subunit c | DW921_08505 | Not Available | Negative | 1981982 - 1982236 | 8189.59 |
| atp synthase f0 subunit a | DW921_08510 | Not Available | Negative | 1982283 - 1983326 | 37895.9 |
| hypothetical protein | DW921_08515 | Not Available | Negative | 1983350 - 1983763 | 16547.2 |
| atp synthase f1 subunit epsilon | DW921_08520 | Not Available | Negative | 1983840 - 1984091 | 8741.47 |
| f0f1 atp synthase subunit beta | DW921_08525 | Not Available | Negative | 1984096 - 1985622 | 55721.9 |
| abc transporter permease | DW921_08530 | Not Available | Negative | 1985950 - 1987125 | 43609.9 |
| atp-binding cassette domain-containing protein | DW921_08535 | Not Available | Negative | 1987153 - 1987797 | 24715.7 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | DW921_08540 | Not Available | Negative | 1987800 - 1988498 | 26089.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


