Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4834 family protein | DW921_08440 | Not Available | Negative | 1969249 - 1969539 | 10964.0 |
| cdp-diacylglycerol--serine o-phosphatidyltransferase | DW921_08445 | Not Available | Negative | 1969643 - 1970356 | 26370.7 |
| phosphatidylserine decarboxylase family protein | DW921_08450 | Not Available | Negative | 1970377 - 1971066 | 25983.0 |
| dna polymerase iii subunit alpha | DW921_08455 | Not Available | Positive | 1971227 - 1975024 | 143807.0 |
| thioredoxin | DW921_08460 | Not Available | Positive | 1975073 - 1975390 | 11552.8 |
| hypothetical protein | DW921_08465 | Not Available | Positive | 1975413 - 1975754 | 13155.9 |
| hypothetical protein | DW921_08470 | Not Available | Negative | 1975882 - 1976222 | 13260.0 |
| hypothetical protein | DW921_08475 | Not Available | Negative | 1976297 - 1976803 | 19789.6 |
| f0f1 atp synthase subunit gamma | DW921_08485 | Not Available | Negative | 1978387 - 1979271 | 32742.8 |
| f0f1 atp synthase subunit alpha | DW921_08490 | Not Available | Negative | 1979277 - 1980866 | 57462.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


