Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome small subunit-dependent gtpase a | DW921_08390 | Not Available | Negative | 1961516 - 1962454 | 35194.9 |
| ribosome recycling factor | DW921_08395 | Not Available | Negative | 1962537 - 1963097 | 20652.1 |
| histidine phosphatase family protein | DW921_08400 | Not Available | Positive | 1963335 - 1963856 | 19796.9 |
| acyloxyacyl hydrolase | DW921_08405 | Not Available | Negative | 1963853 - 1965100 | 46651.5 |
| ump kinase | DW921_08410 | Not Available | Negative | 1965122 - 1965832 | 25549.3 |
| mate family efflux transporter | DW921_08415 | Not Available | Negative | 1965881 - 1967191 | 48542.3 |
| biotin--[acetyl-coa-carboxylase] ligase | DW921_08420 | Not Available | Negative | 1967188 - 1967925 | 28332.4 |
| yran family protein | DW921_08425 | Not Available | Negative | 1968002 - 1968367 | 13797.6 |
| hypothetical protein | DW921_08430 | Not Available | Positive | 1968440 - 1968676 | 9536.65 |
| nucleoside deaminase | DW921_08435 | Not Available | Positive | 1968688 - 1969122 | 15898.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


