Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfate adenylyltransferase subunit cysn | DW921_08340 | Not Available | Negative | 1947617 - 1949122 | 56392.8 |
| sulfate adenylyltransferase subunit cysd | DW921_08345 | Not Available | Negative | 1949144 - 1950055 | 35786.0 |
| adenylyl-sulfate kinase | DW921_08350 | Not Available | Negative | 1950073 - 1950684 | 22648.4 |
| slc13/dass family transporter | DW921_08355 | Not Available | Negative | 1950703 - 1952250 | 56661.8 |
| 3'(2'),5'-bisphosphate nucleotidase | DW921_08360 | Not Available | Negative | 1952260 - 1953069 | 30282.1 |
| amino acid permease | DW921_08365 | Not Available | Negative | 1953161 - 1954828 | 60441.4 |
| tolc family protein | DW921_08370 | Not Available | Negative | 1954949 - 1956268 | 50446.6 |
| acrb/acrd/acrf family protein | DW921_08375 | Not Available | Negative | 1956265 - 1959300 | 112220.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW921_08380 | Not Available | Negative | 1959313 - 1960389 | 39527.1 |
| m20/m25/m40 family metallo-hydrolase | DW921_08385 | Not Available | Negative | 1960411 - 1961436 | 38591.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


