Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sialidase | DW921_08290 | Not Available | Negative | 1935715 - 1937343 | 60064.8 |
| duf386 domain-containing protein | DW921_08295 | Not Available | Negative | 1937355 - 1937813 | 17297.6 |
| mfs transporter | DW921_08300 | Not Available | Negative | 1937831 - 1939063 | 44526.0 |
| n-acylglucosamine 2-epimerase | DW921_08305 | Not Available | Negative | 1939105 - 1940289 | 45713.5 |
| n-acetylneuraminate lyase | DW921_08310 | Not Available | Negative | 1940295 - 1941212 | 34094.2 |
| cyclically-permuted mutarotase family protein | DW921_08315 | Not Available | Negative | 1941304 - 1942398 | 39915.5 |
| rok family transcriptional regulator | DW921_08320 | Not Available | Positive | 1942625 - 1943833 | 44478.9 |
| transporter | DW921_08325 | Not Available | Positive | 1943846 - 1944805 | 35526.7 |
| alpha-l-fucosidase | DW921_08330 | Not Available | Positive | 1944882 - 1946219 | 50590.1 |
| sulfotransferase | DW921_08335 | Not Available | Negative | 1946492 - 1947598 | 43722.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


