Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family protein | DW921_08190 | Not Available | Positive | 1908189 - 1909508 | 49780.5 |
| triose-phosphate isomerase | DW921_08195 | Not Available | Positive | 1909552 - 1910307 | 26917.2 |
| spor domain-containing protein | DW921_08200 | Not Available | Positive | 1910456 - 1910917 | 17283.9 |
| gtp cyclohydrolase i fole | DW921_08205 | Not Available | Positive | 1910929 - 1911522 | 22668.8 |
| dna primase | DW921_08210 | Not Available | Negative | 1911535 - 1913742 | 83393.1 |
| pap2 family protein | DW921_08215 | Not Available | Negative | 1913794 - 1915191 | 52515.4 |
| malate dehydrogenase | DW921_08220 | Not Available | Negative | 1915547 - 1916548 | 35839.0 |
| hypothetical protein | DW921_08225 | Not Available | Positive | 1916654 - 1916854 | 7799.42 |
| Tmrna,resume consensus sequence (at 88): attatctggcaacgaaaa | Not Available | Not Available | Positive | 1916928 - 1917322 | Not Available |
| cytochrome c biogenesis protein | DW921_08235 | Not Available | Negative | 1917747 - 1919840 | 80730.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


