Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent dna ligase liga | DW921_08085 | Not Available | Positive | 1883687 - 1885684 | 75320.8 |
| 4-hydroxy-tetrahydrodipicolinate synthase | DW921_08090 | Not Available | Positive | 1885792 - 1886685 | 32941.2 |
| hypothetical protein | DW921_08095 | Not Available | Positive | 1887090 - 1887866 | 29236.6 |
| site-specific integrase | DW921_08100 | Not Available | Positive | 1888462 - 1889694 | 47185.3 |
| hypothetical protein | DW921_08105 | Not Available | Positive | 1889712 - 1890104 | 14474.7 |
| hypothetical protein | DW921_08110 | Not Available | Positive | 1890117 - 1890473 | 13222.0 |
| mobilization protein | DW921_08115 | Not Available | Positive | 1890722 - 1892089 | 52792.2 |
| hypothetical protein | DW921_08120 | Not Available | Positive | 1892259 - 1892552 | 11436.2 |
| hypothetical protein | DW921_08125 | Not Available | Positive | 1892564 - 1893544 | 38560.1 |
| hypothetical protein | DW921_08130 | Not Available | Positive | 1893803 - 1894411 | 23421.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


