Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4890 domain-containing protein | DW921_08035 | Not Available | Negative | 1873729 - 1874271 | 20720.6 |
| hypothetical protein | DW921_08040 | Not Available | Negative | 1874373 - 1876130 | 66783.7 |
| laci family transcriptional regulator | DW921_08045 | Not Available | Negative | 1876273 - 1877274 | 37133.0 |
| hypothetical protein | DW921_08050 | Not Available | Negative | 1877321 - 1877770 | 17523.3 |
| amp nucleosidase | DW921_08055 | Not Available | Positive | 1877988 - 1878764 | 29295.4 |
| dna polymerase iii subunit delta | DW921_08060 | Not Available | Positive | 1878775 - 1879791 | 38865.2 |
| xre family transcriptional regulator | DW921_08065 | Not Available | Positive | 1880535 - 1880984 | 17085.4 |
| dihydroorotate dehydrogenase electron transfer subunit | DW921_08070 | Not Available | Positive | 1881074 - 1881850 | 28278.7 |
| dihydroorotate dehydrogenase | DW921_08075 | Not Available | Positive | 1881838 - 1882749 | 32258.3 |
| trna (guanosine(37)-n1)-methyltransferase trmd | DW921_08080 | Not Available | Negative | 1882904 - 1883584 | 25851.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


