Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | DW921_07935 | Not Available | Positive | 1847098 - 1848252 | 41648.8 |
| endonuclease/exonuclease/phosphatase family protein | DW921_07940 | Not Available | Positive | 1848286 - 1849221 | 35221.7 |
| glycoside hydrolase family 92 protein | DW921_07945 | Not Available | Positive | 1849254 - 1851518 | 86238.5 |
| hypothetical protein | DW921_07950 | Not Available | Positive | 1851553 - 1854705 | 118489.0 |
| iron-sulfur cluster repair di-iron protein | DW921_07955 | Not Available | Positive | 1854821 - 1855549 | 28010.7 |
| penicillin-binding protein | DW921_07960 | Not Available | Positive | 1855727 - 1858054 | 88299.7 |
| hypothetical protein | DW921_07965 | Not Available | Positive | 1858211 - 1859032 | 31406.8 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase | DW921_07970 | Not Available | Negative | 1859027 - 1859452 | 16175.5 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | DW921_07975 | Not Available | Positive | 1859556 - 1860317 | 28408.9 |
| insulinase family protein | DW921_07980 | Not Available | Positive | 1860320 - 1861606 | 49297.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


