Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 2 protein | DW921_07880 | Not Available | Positive | 1833029 - 1835578 | 95601.4 |
| gnat family n-acetyltransferase | DW921_07885 | Not Available | Negative | 1835632 - 1836171 | 20598.9 |
| n-acetyltransferase | DW921_07890 | Not Available | Negative | 1836340 - 1836894 | 20997.2 |
| n-acetyltransferase | DW921_07895 | Not Available | Positive | 1837044 - 1837526 | 18664.5 |
| duf3795 domain-containing protein | DW921_07900 | Not Available | Negative | 1837611 - 1838141 | 20567.4 |
| hypothetical protein | DW921_07910 | Not Available | Positive | 1838899 - 1840860 | 74053.4 |
| arac family transcriptional regulator | DW921_07915 | Not Available | Negative | 1840857 - 1841744 | 34907.0 |
| mannose-6-phosphate isomerase | DW921_07920 | Not Available | Positive | 1841879 - 1843618 | 66382.3 |
| rok family protein | DW921_07925 | Not Available | Positive | 1843632 - 1844732 | 39275.1 |
| glycoside hydrolase family 92 protein | DW921_07930 | Not Available | Positive | 1844748 - 1847084 | 86957.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


