Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ctp synthase | DW921_07830 | Not Available | Negative | 1821773 - 1823371 | 59979.2 |
| duf3078 domain-containing protein | DW921_07835 | Not Available | Positive | 1823585 - 1825189 | 61353.4 |
| trimeric intracellular cation channel family protein | DW921_07840 | Not Available | Positive | 1825235 - 1825861 | 22722.3 |
| ompa family protein | DW921_07845 | Not Available | Negative | 1825940 - 1826659 | 24386.9 |
| serine hydroxymethyltransferase | DW921_07850 | Not Available | Negative | 1826697 - 1827977 | 46797.5 |
| port family protein | DW921_07855 | Not Available | Negative | 1828020 - 1828751 | 27266.8 |
| flavin reductase family protein | DW921_07860 | Not Available | Negative | 1828762 - 1829328 | 21139.6 |
| aspartate carbamoyltransferase regulatory subunit | DW921_07865 | Not Available | Negative | 1829333 - 1829791 | 17352.2 |
| aspartate carbamoyltransferase | DW921_07870 | Not Available | Negative | 1829814 - 1830755 | 36257.7 |
| hypothetical protein | DW921_07875 | Not Available | Positive | 1831877 - 1832986 | 41844.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


