Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent fis family transcriptional regulator | DW921_07760 | Not Available | Negative | 1803591 - 1804919 | 49907.3 |
| hypothetical protein | DW921_07765 | Not Available | Positive | 1805492 - 1805728 | 8798.46 |
| hypothetical protein | DW921_07775 | Not Available | Negative | 1806018 - 1806914 | 34322.7 |
| hypothetical protein | DW921_07795 | Not Available | Positive | 1811723 - 1813360 | 61411.0 |
| acyltransferase | DW921_07800 | Not Available | Negative | 1813425 - 1814525 | 42146.6 |
| hypothetical protein | DW921_07805 | Not Available | Positive | 1814914 - 1815324 | 16042.6 |
| hypothetical protein | DW921_07810 | Not Available | Positive | 1815613 - 1816263 | 24576.3 |
| s9 family peptidase | DW921_07815 | Not Available | Negative | 1816330 - 1818462 | 80259.4 |
| hypothetical protein | DW921_07820 | Not Available | Negative | 1818527 - 1819741 | 48380.9 |
| membrane protein insertase yidc | DW921_07825 | Not Available | Negative | 1819899 - 1821752 | 71089.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


