Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_07710 | Not Available | Negative | 1794250 - 1794687 | 17235.1 |
| hypothetical protein | DW921_07715 | Not Available | Negative | 1794703 - 1795080 | 14627.3 |
| rna polymerase sigma factor | DW921_07720 | Not Available | Negative | 1795132 - 1795683 | 21784.7 |
| ribonuclease z | DW921_07725 | Not Available | Negative | 1795756 - 1796670 | 34514.9 |
| succinate coa transferase | DW921_07730 | Not Available | Negative | 1796689 - 1798179 | 54176.9 |
| Trna-thr | Not Available | Not Available | Positive | 1798516 - 1798588 | Not Available |
| hypothetical protein | DW921_07740 | Not Available | Negative | 1798757 - 1799146 | 15019.6 |
| trkh family potassium uptake protein | DW921_07745 | Not Available | Positive | 1799357 - 1800871 | 56650.9 |
| sensor protein kdpd | DW921_07750 | Not Available | Positive | 1800939 - 1802066 | 43059.7 |
| pas domain-containing protein | DW921_07755 | Not Available | Positive | 1802078 - 1803520 | 54272.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


