Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sam-dependent dna methyltransferase | DW921_07400 | Not Available | Positive | 1711591 - 1713024 | 53491.8 |
| duf1016 family protein | DW921_07405 | Not Available | Positive | 1713029 - 1714180 | 44330.6 |
| restriction endonuclease subunit s | DW921_07410 | Not Available | Positive | 1714186 - 1715601 | 53600.4 |
| integrase | DW921_07415 | Not Available | Negative | 1715624 - 1716427 | 31541.2 |
| type i restriction endonuclease | DW921_07420 | Not Available | Positive | 1716518 - 1716961 | 16885.6 |
| restriction endonuclease subunit s | DW921_07425 | Not Available | Negative | 1716956 - 1718209 | 47221.6 |
| 6-bladed beta-propeller | DW921_07430 | Not Available | Negative | 1718385 - 1719401 | 38788.4 |
| 6-bladed beta-propeller | DW921_07435 | Not Available | Negative | 1719445 - 1720617 | 44389.4 |
| duf5107 domain-containing protein | DW921_07440 | Not Available | Negative | 1720885 - 1724046 | 120466.0 |
| hypothetical protein | DW921_07445 | Not Available | Negative | 1724082 - 1727117 | 115373.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


