Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| insulinase family protein | DW921_07350 | Not Available | Positive | 1695576 - 1696814 | 47512.1 |
| mate family efflux transporter | DW921_07355 | Not Available | Positive | 1696811 - 1698130 | 48419.5 |
| hybrid sensor histidine kinase/response regulator | DW921_07360 | Not Available | Positive | 1698137 - 1700644 | 94734.0 |
| sigma-54-dependent fis family transcriptional regulator | DW921_07365 | Not Available | Positive | 1700734 - 1702083 | 50471.4 |
| rna pseudouridine synthase | DW921_07370 | Not Available | Negative | 1702419 - 1703090 | 25335.6 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | DW921_07375 | Not Available | Negative | 1703196 - 1703942 | 25888.4 |
| tetr/acrr family transcriptional regulator | DW921_07380 | Not Available | Negative | 1703964 - 1704560 | 22913.0 |
| duf4091 domain-containing protein | DW921_07385 | Not Available | Negative | 1705157 - 1707451 | 88636.6 |
| dead/deah box helicase | DW921_07390 | Not Available | Positive | 1708222 - 1710927 | 102735.0 |
| hypothetical protein | DW921_07395 | Not Available | Positive | 1710930 - 1711586 | 25308.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


