Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-n-acetylhexosaminidase | DW921_07250 | Not Available | Positive | 1661294 - 1663261 | 76348.9 |
| sialate o-acetylesterase | DW921_07255 | Not Available | Positive | 1663258 - 1665339 | 78940.0 |
| fumarate hydratase | DW921_07260 | Not Available | Negative | 1665735 - 1667378 | 60511.5 |
| tlpa family protein disulfide reductase | DW921_07265 | Not Available | Negative | 1667469 - 1669016 | 58049.2 |
| gtpase hflx | DW921_07270 | Not Available | Negative | 1669047 - 1670303 | 47806.6 |
| ragb/susd family nutrient uptake outer membrane protein | DW921_07275 | Not Available | Negative | 1670799 - 1672325 | 55891.1 |
| tonb-dependent receptor | DW921_07280 | Not Available | Negative | 1672344 - 1675367 | 110758.0 |
| site-specific integrase | DW921_07285 | Not Available | Positive | 1675724 - 1676905 | 46880.7 |
| tonb-dependent receptor | DW921_07290 | Not Available | Positive | 1677184 - 1680171 | 111194.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW921_07295 | Not Available | Positive | 1680199 - 1681737 | 57244.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


