Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3868 domain-containing protein | DW921_07200 | Not Available | Negative | 1644392 - 1645843 | 54102.5 |
| hypothetical protein | DW921_07205 | Not Available | Negative | 1645864 - 1647321 | 53564.6 |
| hypothetical protein | DW921_07210 | Not Available | Negative | 1647510 - 1649309 | 65638.4 |
| dmt family transporter | DW921_07215 | Not Available | Negative | 1649541 - 1650458 | 33636.5 |
| cardiolipin synthase | DW921_07220 | Not Available | Positive | 1650671 - 1651957 | 49077.8 |
| lactonase family protein | DW921_07225 | Not Available | Negative | 1652087 - 1653238 | 41325.9 |
| hypothetical protein | DW921_07230 | Not Available | Positive | 1653483 - 1654445 | 35676.3 |
| hypothetical protein | DW921_07235 | Not Available | Negative | 1654505 - 1655752 | 47690.3 |
| ragb/susd family nutrient uptake outer membrane protein | DW921_07240 | Not Available | Negative | 1655876 - 1657498 | 61160.8 |
| tonb-dependent receptor | DW921_07245 | Not Available | Negative | 1657519 - 1660857 | 123121.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


