Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein 2 | DW921_07150 | Not Available | Positive | 1627613 - 1629463 | 69161.6 |
| rod shape-determining protein roda | DW921_07155 | Not Available | Positive | 1629444 - 1630895 | 54219.6 |
| hypothetical protein | DW921_07160 | Not Available | Negative | 1630843 - 1631457 | 22724.1 |
| hypothetical protein | DW921_07165 | Not Available | Negative | 1631420 - 1632991 | 58300.9 |
| dna polymerase iii subunit delta' | DW921_07170 | Not Available | Negative | 1633156 - 1634283 | 43390.9 |
| methylenetetrahydrofolate reductase | DW921_07175 | Not Available | Negative | 1634324 - 1635277 | 35817.0 |
| glycoside hydrolase family 92 protein | DW921_07180 | Not Available | Negative | 1635538 - 1637730 | 81765.7 |
| mannose-6-phosphate isomerase | DW921_07185 | Not Available | Negative | 1637743 - 1638714 | 35971.2 |
| hypothetical protein | DW921_07190 | Not Available | Negative | 1638952 - 1641312 | 83670.5 |
| tonb-dependent receptor | DW921_07195 | Not Available | Negative | 1641359 - 1644049 | 100340.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


