Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysm peptidoglycan-binding domain-containing protein | DW921_07100 | Not Available | Positive | 1612864 - 1614120 | 47426.2 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DW921_07105 | Not Available | Positive | 1614229 - 1616496 | 86359.0 |
| merr family transcriptional regulator | DW921_07110 | Not Available | Negative | 1616567 - 1616914 | 13613.6 |
| m23 family peptidase | DW921_07115 | Not Available | Negative | 1616931 - 1617899 | 36688.4 |
| alanine--trna ligase | DW921_07120 | Not Available | Positive | 1618032 - 1620650 | 96982.9 |
| inorganic phosphate transporter | DW921_07125 | Not Available | Negative | 1621177 - 1623480 | 85687.9 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase purh | DW921_07130 | Not Available | Positive | 1623668 - 1625194 | 56223.1 |
| rod shape-determining protein | DW921_07135 | Not Available | Positive | 1625210 - 1626232 | 36932.9 |
| rod shape-determining protein mrec | DW921_07140 | Not Available | Positive | 1626229 - 1627080 | 31479.7 |
| rod shape-determining protein mred | DW921_07145 | Not Available | Positive | 1627125 - 1627613 | 18313.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


